Package: FishDiveR
Title: Classify Aquatic Animal Behaviours from Vertical Movement Data
Version: 1.2.0
Authors@R: 
    person(given = "Calvin", family = "Beale", email = "calvin.beale.8@gmail.com", role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0002-3505-8929"))
Maintainer: Calvin Beale <calvin.beale.8@gmail.com>
Description: Quantitatively analyse depth time-series data from pop-up
        satellite archival tags (PSATs) through the application of
        continuous wavelet transformation (CWT) combined with Principal
        Component Analysis (PCA), and k-means clustering. Import, crop,
        and plot depth time-depth records (TDRs). Using CWT to detect
        important signals within the non-stationary data, we create
        daily wavelet statistics to summarise vertical movements on
        different wavelet periods and combine with daily and diel depth
        statistics. Classify depth time-series with unsupervised
        k-means clustering into 24-hour periods of vertical movement
        behaviour with distinct patterns of vertical movement. Plot
        example days from each behaviour cluster, and plot the TDR
        coloured by cluster. Based on principles of combining CWT with
        k-means first developed by Sakamoto et al. (2009)
        <doi:10.1371/journal.pone.0005379> and redeveloped by Beale et
        al. (2026) <doi:10.1186/s40462-025-00622-w>.
License: GPL (>= 3)
URL: https://calvinsbeale.github.io/FishDiveR/,
        https://github.com/calvinsbeale/FishDiveR,
        https://calvinbeale.co.uk/fishdiver/
BugReports: https://github.com/calvinsbeale/FishDiveR/issues
Imports: cluster, cowplot, data.table, dplyr, FactoMineR, geometry,
        ggplot2, gridExtra, lubridate, moments, patchwork, colorspace,
        rgl, Rfast, rlang, scales, suncalc, tidyr, WaveletComp
Suggests: bslib, DT, knitr, rmarkdown, rstudioapi, shiny (>= 1.7.0),
        tcltk, testthat (>= 3.0.0)
Depends: R (>= 3.5.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.1
Config/pak/sysreqs: cmake libfreetype6-dev libglu1-mesa-dev make
        texlive libicu-dev libpng-dev libuv1-dev libgl1-mesa-dev
        zlib1g-dev
Repository: https://calvinsbeale.r-universe.dev
Date/Publication: 2026-11-04 07:35:47 UTC
RemoteUrl: https://github.com/calvinsbeale/fishdiver
RemoteRef: HEAD
RemoteSha: 6b1523470d0e3137e610aee710d915dbfb80e5e8
NeedsCompilation: no
Packaged: 2026-11-04 09:25:54 UTC; root
Author: Calvin Beale [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-3505-8929>)